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IMG_9268
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IMG_9268

Structural Biology and Biophysics Platform

Description

The Structural Biology and Biophysics platform provides crucial support in the development of potential small molecule-based drugs, therapeutic antibodies and recombinant protein-based vaccines. The platform is also fundamental for the study of molecular mechanisms at the atomic level, clarifying the structure/function relationships of proteins involved in pathological pathways. To achieve these goals, the platform is equipped with cutting-edge equipment that allows a multi-technique approach such as nuclear magnetic resonance, circular dichroism, calorimetry and interferometry. 

The Structural Biology and Biophysics platform supports several research projects in different therapeutic areas such as aging diseases, cancer, infectious diseases and biomedical applications. The diversity of all the ongoing research projects well represents the potential of Structural Biology, which can be applied to both basic research and translational science and can transversally support different research activities.

Expertise

  • Production of recombinant proteins: from cloning to purification and characterization;
  • Determination of the size, structure and stability of macromolecules;
  • Structural, kinetic and thermodynamic studies of protein-protein and protein-ligand interactions;
  • BLI-based and NMR-based fragments screening;
  • Development and application of analytical methods.

Facilities & Equipment

  • Molecular biology laboratories for the production of recombinant proteins according to the most modern cloning, expression and purification techniques;
  • Avance Neo 800 MHz NMR Spectrometer equipped with cryo-probe
  • MicroCal PEAQ_ITC, Malvern
  • Bio-Layer Interferometer Octet Red96e, fortèBIO
  • Spectropolarimeter J-1500, JASCO
  • Multi-mode high-performance Microplate Reader CLARIOstar Plus, BMG Labtech

Contacts:

calfano@fondazionerimed.com

Collaboration:

  • King’s College London, London, United Kingdom
  • EBRI – European Brain Research Institute Rita Levi-Montalcini, Rome, Italy
  • Università degli studi della Campania “Luigi Vanvitelli”, Naples, Italy
  • Università degli Studi di Palermo, Italy
  • Institute of Biophysics (IBF-CNR), Palermo, Italy
  • International Covid-19 NMR Consortium
  • Institute of Nanotechnology (CNR NANOTEC), Lecce, Italy
  • i3S Institute for Research and Innovation in Health, Porto, Portugal

Publications

Peer review
Molecular Crowding: The History and Development of a Scientific Paradigm
Caterina Alfano, PhD , Yann Fichou , Klaus Huber , Matthias Weiss , Evan Spruijt , Simon Ebbinghaus , Giuseppe De Luca , Maria Agnese Morando, PhD , Valeria Vetri , Piero Andrea Temussi , Annalisa Pastore
Chemical Review, 2024, 124, 6, 3186–3219
https://doi.org/10.1021/acs.chemrev.3c00615
Journal Paper
Investigation on a MMACHC mutant from cblC disease: The c.394C>T variant
Rosa Passantino , Maria Rosalia Mangione , Maria Grazia Ortore , Maria Assunta Costa , Alessia Provenzano , Heinz Amenitsch , Raffaele Sabbatella , Caterina Alfano, PhD , Vincenzo Martorana , Silvia Vilasi
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1870(6):140793, 2022
https://doi.org/10.1016/j.bbapap.2022.140793
Journal Paper
Computational design and characterization of a multiepitope vaccine against carbapenemase-producing Klebsiella pneumoniae strains, derived from antigens identified through reverse vaccinology
Nicola Cuscino , Ayesha Fatima , Vincenzo Di Pilato , Matteo Bulati , Caterina Alfano, PhD , Elisa Monaca , Giuseppina Di Mento , Daniele Di Carlo , Francesca Cardinale , Francesco Monaco , Gian Maria Rossolini , Asif M. Khan , Pier Giulio Conaldi ,
Computational and Structural Biotechnology Journal, 20:4446-4463, 2022
https://doi.org/10.1016/j.csbj.2022.08.035
Journal Paper
ETV6-related thrombocytopenia: dominant negative effect of mutations as common pathogenic mechanism
Michela Faleschini , Daniele Ammeti , Nicole Papa , Caterina Alfano, PhD , Roberta Bottega , Giorgia Fontana , Valeria Capaci , Melania E. Zanchetta , Federico Pozzani , Francesca Montanari , Valeria Petroni , Paola Giordano , Patrizia Noris , Fiorina Giona , Anna Savoia
Haematologica, 107(9):2249-2254, 2022
https://doi.org/10.3324/haematol.2022.280729
Journal Paper
Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
Erika F. Dudás , Rita Puglisi , Sophie Marianne Korn , Caterina Alfano, PhD , Maria Laura Bellone , Fabrizio Dal Piaz , Geoff Kelly , Elisa Monaca , Andreas Schlundt , Harald Schwalbe , Annalisa Pastore
Biomolecular NMR Assignments, 15(2):235-241, 2021
https://doi.org/10.1007/s12104-021-10011-0
Journal Paper
RNA as a key factor in driving or preventing self-assembly of the TAR DNA-binding protein 43
Elsa Zacco , Ricardo Graña-Montes , Stephen R. Martin , Natalia Sanchez de Groot , Caterina Alfano, PhD , Gian Gaetano Tartaglia , Annalisa Pastore
Journal of Molecular Biology, 431(8):671-1688, 2019
https://doi.org/10.1016/j.jmb.2019.01.028
Journal Paper
Recombinant mussel protein Pvfp-5β: a potential tissue bioadhesive
Radha Santonocito , Francesca Venturella , Fabrizio Dal Piaz , Maria Agnese Morando, PhD , Alessia Provenzano , Estella Rao , Maria Assunta Costa , Donatella Bulone , Pier Luigi San Biagio , Daniela Giacomazza , Alessandro Sicorello , Caterina Alfano, PhD *, Rosa Passantino *, Annalisa Pastore
Journal of Biological Chemistry, 294(34):12826-12835, 2019
https://doi.org/10.1074/jbc.RA119.009531
Journal Paper
Large-scale recombinant production of the SARS-CoV-2 proteome for high-throughput and structural biology applications
Nadide Altincekic , Sophie Marianne Korn , Nusrat Shahin Qureshi , Marie Dujardin , Martí Ninot-Pedrosa , Rupert Abele , Marie Jose Abi Saad , Caterina Alfano, PhD , ... , Elisa Monaca , ... , Raffaele Sabbatella , ... , Andreas Schlundt
Frontiers in Molecular Biosciences, 8:653148, 2021
https://doi.org/10.3389/fmolb.2021.653148
Journal Paper
Thrombopoietin mutation in congenital amegakaryocytic thrombocytopenia treatable with romiplostim
Alessandro Pecci , Iman Ragab , Valeria Bozzi , Daniela De Rocco , Serena Barozzi , Tania Giangregorio , Heba Ali , Federica Melazzini , Mohamed Sallam , Caterina Alfano, PhD , Annalisa Pastore , Carlo Luigi Balduini , Anna Savoia
EMBO Molecular Medicine, 10(1):63-75, 2018
https://doi.org/10.15252/emmm.201708168
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