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Contatti:

Department of Research ISMETT

Via Ernesto Tricomi,5
90127 PALERMO, Italy

Facilities:

Proteomics Platform

Collaborazioni:

Institute for Aging and Chronic diseases, University of Liverpool, UK

German Center for Neurodegenerative Diseases (DZNE), Munich, Germany

Queen Mary University of London, UK

Norwich Medical School, University of East Anglia, Norwich, UK

Dipartimento di Scienze Farmacologiche, University of Pisa, Italy

Dipartimento di Scienze e Tecnologie Biologiche Chimiche e Farmaceutiche (STEBICEF), University ofPalermo, Italy

Weill Cornell Medicine Graduate School of Medical Sciences, New York, US

Descrizione

Research in Scilabra’s Lab, which currently comprises a post-doc, 3 PhD students and an MSc intern, is focused on elucidating the role of a class of membrane-tethered metalloproteinases, called ADAMs (a disintegrin and metalloproteinases), in health and disease. For their ability to release cell surface proteins, ADAMs are involved in a number of cellular processes, including cell-communication, cell-adhesion and molecular transport. Our lab uses a synergistic array of proteomic, cell biology, biochemistry and in vivo models to identify substrates of ADAMs, validate them by orthogonal methods and uncover functional consequences of their ADAM-dependent release in vivo.

In detail, our studies are mainly centered on elucidating new functions of ADAM17 and its essential cofactors, the inactive rhomboid-like proteins 1 and 2 (iRhom1 and iRhom2) by using mass spectrometry-based approaches. Among others, Dr Scilabra’s lab is currently testing the hypothesis that iRhom2 inactivation has beneficial effects on OA progression by a dual role in inhibiting the release of TNF (a proinflammatory cytokine promoting the expression of cartilage catabolic factors) and LRP1, and endocytic receptor that reduces levels of cartilage-degrading proteases(Fondazione Con il Sud, N. 2018-PDR-00799, 01/09/2019 – 01/03/2023 “iRhom2: a new therapeutic target in osteoarthritis?”). In addition, his lab has recently found a new ADAM17-independent function of iRhom2 in aiding the maturation of MHC class I molecules and it is currently testing whether this mechanism has functional consequences in the recognition of cancer cells by the immune system or allograft transplantation (Piano Nazionale di Ripresa e Resilienza – Italian Ministry of University and Research (MIUR), DOT 1720429, CUP B73D21009330006; “Dissecting the role of iRhom2 in the autophagy of MHC-I molecules to enhance responsiveness of PDAC to immunotherapy”).

Team

Simone Bonelli

PhD Student in Technologies and Sciences for Human Health - University of Palermo

Elisabetta Scalia

PhD Student in Technologies and Sciences for Human Health - Università degli Studi di Palermo

Publications

Journal Paper
iRhom2 regulates ectodomain shedding and surface expression of the major histocompatibility complex (MHC) class I
Matteo Calligaris , Donatella Pia Spanò , Simone Bonelli , Stephan A Muller , Claudia Carcione , Danilo D'Apolito, PhD , Giandomenico Amico, PhD , Monica Miele, PhD , Mariangela Di Bella , Giovanni Zito , Elisa Nuti , Armando Rossello , Carl P Blobel , Stefan F Lichtenthaler , Simone Dario Scilabra, PhD
Cell. Mol. Life Sci. 81, 163 (2024)
https://link.springer.com/article/10.1007/s00018-024-05201-7
Journal Paper
Proteomic analysis and functional validation reveal distinct therapeutic capabilities related to priming of mesenchymal stromal/stem cells with IFN-γ and hypoxia: potential implications for their clinical use
Matteo Calligaris , Giovanni Zito , Rosalia Busà , Matteo Bulati , Gioacchin Iannolo , Alessia Gallo , Anna Paola Carreca , Nicola Cuscino , Salvatore Castelbuono , Claudia Carcione , Claudio Centi , Giandomenico Amico, PhD , Alessandro Bertani , Cinzia Chinnici, Ph.D , Pier Giulio Conaldi , Simone Dario Scilabra, PhD , Vitale Miceli
https://doi.org/10.3389/fcell.2024.1385712
Journal Paper
A top-down approach to uncover the hidden ligandome of low-density lipoprotein receptor-related protein 1 in cartilage.
Yamamoto K, Scavenius C, Meschis MM, Gremida AME, Mogensen EH, Thøgersen IB, Bonelli S, Scilabra SD, Jensen A, Santamaria S, Ahnström J, Bou-Gharios G, Enghild JJ, Nagase H.Matrix Biol. 2022 Sep;112:190-218
Journal Paper
High-Resolution Secretome Analysis of Chemical Hypoxia Treated Cells Identifies Putative Biomarkers of Chondrosarcoma
Spanò DP, Bonelli S, Calligaris M, Carreca AP, Carcione C, Zito G, Nicosia A, Rizzo S, Scilabra SD. Proteomes. 2022 Jul 20;10(3):25.
Journal Paper
Tissue Inhibitor of Metalloproteases 3 (TIMP-3): In Vivo Analysis Underpins Its Role as a Master Regulator of Ectodomain Shedding
Spanò DP, Scilabra SD. Membranes (Basel). 2022 Feb 11;12(2):211.
Journal Paper
Interleukin 13 (IL-13)-regulated expression of the chondroprotective metalloproteinase ADAM15 is reduced in aging cartilage
Yang CY, Chanalaris A, Bonelli S, McClurg O, Hiles GL, Cates AL, Zarebska JM, Vincent TL, Day ML, Müller SA, Lichtenthaler SF, Nagase H, Scilabra SD, Troeberg L. Osteoarthr Cartil Open. 2020 Dec;2(4):100128
Journal Paper
TIMP-3 facilitates binding of target metalloproteinases to the endocytic receptor LRP-1 and promotes scavenging of MMP-1
Carreca AP, Pravatà VM, Markham M, Bonelli S, Murphy G, Nagase H, Troeberg L, Scilabra SD. Sci Rep. 2020 Jul 21;10(1):12067
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